Changelog
v1.4.0 (2020-06-11)
- [FIX] Clarify language on unsetting a key/value pair #495 (nicholst)
- ENH: Add RECOMMENDED DatasetType key to dataset description #494 (effigies)
- Clarify mask/dseg/probseg in common derivatives #489 (effigies)
- Reorganize derivatives #488 (effigies)
- Enh/prov #486 (satra)
- [ENH] optionally allow LICENSE file #483 (sappelhoff)
- [INFRA] linkchecker - ignore github pull and tree URLs #477 (yarikoptic)
- [ENH] Allow fractional seconds in scans file datetimes #470 (tsalo)
- [MISC] Maintainers -
Scope
responsibility #467 (franklin-feingold) - [FIX] Align tables in MRI section #465 (sappelhoff)
- [FIX] Drop
\_part-
reference from example, introduce\_split-
entity #460 (sappelhoff) - [FIX] clarify participants tsv+json with examples and recommendations #459 (sappelhoff)
- [FIX] Remove BESA from list of restricted keywords of EEG coordsystems #457 (sappelhoff)
- [INFRA] add steps for release protocol (PDF upload) #455 (sappelhoff)
- [FIX] Add reference to PDF on front page of specification #452 (nicholst)
- [INFRA] Add conditional for link-checking releases #451 (franklin-feingold)
- [FIX] unordered list formatting in BEP018 #449 (sappelhoff)
- [FIX] fix inconsistencies for task label between sections #446 (Remi-Gau)
- [FIX] update DECISION-MAKING.md document with new governance #441 (sappelhoff)
- [ENH] Add
res
andden
keywords to indicate resolution of resampled data #301 (oesteban) - [ENH] BEP 003: Common Derivatives #265 (effigies)
- [ENH] Add Glossary of terms/abbreviations used in the specification #152 (yarikoptic)
v1.3.0 (2020-04-14)
- [INFRA] add zenodo badge to README #447 (sappelhoff)
- Added contributors from VisLab #444 (VisLab)
- FIX: Clarify snake_case+CamelCase in TSV+JSON #442 (sappelhoff)
- [FIX] Eliminate web/online-specific language #437 (nicholst)
- [INFRA] ensure build_docs_pdf CircleCI job runs last #436 (sappelhoff)
- [INFRA] Add issue templates for GitHub #434 (sappelhoff)
- [INFRA] Get latest PDF build from CircleCI artifacts #433 (sappelhoff)
- [INFRA] Update release protocol #432 (franklin-feingold)
- [INFRA] add support for building PDF versions of the spec #431 (Arshitha)
- [ENH] Explicitly mention bids-validator and update link #428 (sappelhoff)
- [INFRA] use new bids-maintenance GitHub account to take over automatic work #426 (sappelhoff)
- [FIX] Unify section titles and table-of-contents entries #422 (nicholst)
- [INFRA] add # before heading in CHANGES #419 (sappelhoff)
- [INFRA] fix heading of auto changelog to be a markdown header #417 (sappelhoff)
- ENH: Add OPTIONAL EthicsApprovals field to dataset description #412 (effigies)
- [ENH] BEP 018 - Genetic Information #395 (effigies)
v1.2.2 (2020-02-12)
- [FIX] improve wording on data dictionaries #410 (sappelhoff)
- [MISC] update contributions by CPernet #409 (CPernet)
- Units2ascii #408 (satra)
- [FIX] Fix typos and formatting #404 (alexandreroutier)
- BEP 18 suggestions #398 (effigies)
- [MISC] Add Sébastien Tourbier to contributors #394 (sebastientourbier)
- [FIX] consistent units description between EEG/MEG/iEEG. Clarify (derived) SI units + prefixes #391 (sappelhoff)
- [MISC] moved list of extension proposals to the main BIDS website #389 (robertoostenveld)
- [FIX] Typos and clarifications #386 (apjanke)
- ENH: Add watermark to drafts #383 (effigies)
- [MISC] Teon Brooks retiring moderator duties for BEP021 #381 (teonbrooks)
- [FIX] clarify that string is expected for HowToAcknowledge field in dataset_description.json #380 (sappelhoff)
- [MISC] Typo and style #378 (TheChymera)
- [FIX] divide readme into 3 parts #374 (sappelhoff)
- FIX: Refer to BIDS consistently, instead of "\<Modality>-BIDS" #366 (sappelhoff)
- [FIX] Change recommended anonymization date from 1900 to 1925 #363 (alexrockhill)
- [FIX] Minor fixups of inconsistencies while going through a PDF version #362 (yarikoptic)
- specify further the pipeline following #345 #358 (CPernet)
- FIX: clarify that filters should be specified as object of objects #348 (sappelhoff)
- FIX: Clarify channels.tsv is RECOMMENDED consistently across ephys #347 (sappelhoff)
- [FIX] Typo fix (contract -> contrast) in events documentation #346 (snastase)
- RM: rm TOC.md - seems no longer pertinent/used #341 (yarikoptic)
- [MISC] Move the PR template to a separate folder and improve contents #338 (jhlegarreta)
- [INFRA] Find npm requirements file in Circle #336 (franklin-feingold)
- ENH: Clarify the position toward non-compliant derivative datasets and files #334 (effigies)
- [ENH] Clarify phenotypic and assessment data in new section #331 (sappelhoff)
- [MISC] add information about continuous integration checks to PR template #330 (sappelhoff)
- [FIX] Fix
Common principles
Key/value files
section level #328 (jhlegarreta) - [INFRA] Set the maximum heading length lint check to
false
#325 (jhlegarreta) - [FIX] Number explicitly all cases in MRI field map section headers #323 (jhlegarreta)
- [FIX] Add SoftwareFilters to EEG sidecar example #322 (Remi-Gau)
- [MISC] Fixing Travis errors with Remark #320 (franklin-feingold)
- [INFRA] Link to doc builds in CI checks #315 (jasmainak)
- [MISC] Add BEP027 - BIDS Execution to BEP list #314 (effigies)
- [FIX] Add CBV and phase to Entity table #312 (tsalo)
- [FIX] Separate out imaging-specific "common derivatives" #310 (effigies)
- [FIX] Revise template-generated coordinate systems #307 (oesteban)
- [FIX] Normalization of template-generated standard spaces #306 (oesteban)
- [ENH] Release protocol notes #304 (franklin-feingold)
- [INFRA] Adding contributor appendix sentence to PR template #299 (franklin-feingold)
- [ENH] Added discontinuous datatype for EEG and iEEG #286 (wouterpotters)
- [FIX] Clarify paragraph about custom data types #264 (effigies)
v1.2.1 (2019-08-14)
- FIX: repair link in anatomical MRI table #297 (sappelhoff)
- [ENH] Clarify requirements in Release Protocol #294 (franklin-feingold)
- [INFRA+FIX] Use linkchecker (from a dedicated docker image) to check all URLs #293 (yarikoptic)
- [ENH] Adding Contributors and updating contributions #284 (franklin-feingold)
- [MISC] update Code of Conduct contact #281 (franklin-feingold)
- [ENH] Update contributing guide and README to make discussion forums easy to find #279 (emdupre)
- [ENH] Starter Kit dropdown menu #278 (franklin-feingold)
- [ENH] BEP Update #277 (franklin-feingold)
- [INFRA] Update pipenv #274 (sappelhoff)
- [INFRA] Transpose the entity table and link to text anchors describing each entity #272 (sappelhoff)
- [ENH] Add Twitter badge to README and link to website to landing page #268 (franklin-feingold)
- [ENH] adding release guidelines #267 (franklin-feingold)
- [FIX] Common principles: Fix filename in inheritance principle #261 (Lestropie)
- [MISC] update modality references #258 (sappelhoff)
- [INFRA] adding logo to RTD #256 (franklin-feingold)
- [INFRA] add footer, replacing mkdocs/material advert with Github link #250 (sappelhoff)
- [MISC] rename logo files, add a README of where they come from, fix favicon #249 (sappelhoff)
- [MISC] updating MEG doc links, manufacturer names, and adding a missing MEG example #248 (sappelhoff)
- [ENH] Add favicon to RTD #246 (franklin-feingold)
- [MISC] Update Authors in BEP025 #241 (josator2)
- [MISC] Document BEPs that are not active anymore, but have not been merged #240 (sappelhoff)
- [FIX] remove ManufacturersAmplifierModelName (again) #236 (robertoostenveld)
- [INFRA] Update release protocol #235 (effigies)
- [INFRA] Enable version panel for quickly finding previous versions #232 (effigies)
- [FIX] use \<label> for _desc- - not some \<value> + clarify \<value> #224 (yarikoptic)
- [FIX] Clarify Appendix II: The list of licenses only lists examples #222 (sappelhoff)
- [FIX] Trivial column header fix #220 (nicholst)
- [INFRA] Add clarification on merge methods to DECISION_MAKING #217 (sappelhoff)
- [INFRA] Enable permalink urls to appear at (sub)section headings #214 (yarikoptic)
- [INFRA] bump up mkdocs-materials version #211 (sappelhoff)
- [ENH] Various proposed changes to diffusion derivatives #205 (Lestropie)
- [MISC] Fix github username for @chrisgorgo #204 (chrisgorgo)
- [FIX] clarify example 3 in common principles (inheritance) #202 (sappelhoff)
- [MISC] Expand entity table for MEG/EEG/iEEG specific files #198 (sappelhoff)
- [FIX] make iEEG ToC more consistent with MEG and EEG #191 (robertoostenveld)
- [FIX] Clarify use of acq and task parameters in EEG, MEG, and iEEG #188 (sappelhoff)
- [FIX] clarify use of tools for CTF data renaming #187 (sappelhoff)
- [MISC] Add bep006 and bep010 to completed beps and fix links #186 (sappelhoff)
- [FIX] change file for definition of electrical stimulation labels from _electrodes.json to _events.json #185 (ezemikulan)
- [ENH] relax ieeg channel name requirements of letters and numbers only #182 (sappelhoff)
- [FIX] make MEG section headings and ToC consistent to the EEG and iEEG specs #181 (robertoostenveld)
- [FIX] make section headings and ToC consistent between meg and eeg specs #180 (robertoostenveld)
- [MISC] Spelling fixes #179 (DimitriPapadopoulos)
- [ENH] Alternative folder organization for raw, derived, and source data #178 (chrisgorgo)
- [INFRA] Adding instructions for naming PRs #177 (chrisgorgo)
- [MISC] Introducing Stefan Appelhoff as the first Maintainer #176 (chrisgorgo)
- [FIX] Clarify name of "BrainVision" format #175 (JegouA)
- [FIX] Fixes spelling of continuous #171 (emdupre)
- [FIX] Clarify continuous recording metadata fields #167 (effigies)
- [FIX] changed reference of
dcm2nii
todcm2niix
#166 (DimitriPapadopoulos) - [FIX] Removing a leftover file #162 (chrisgorgo)
- [ENH] Derived (processed) MR data #109 (chrisgorgo)
- [FIX] Specify marker file names for KIT data (MEG) #62 (monkeyman192)
- [FIX] Remove father-level for meg filetypes other than BTi/4D data #19 (teonbrooks)
v1.2.0 (2019-03-04)
- [MISC] Adding Dimitri Papadopoulos Orfanos to the list of contributors #157 (DimitriPapadopoulos)
- RF: use "specification" not "protocol" to refer to BIDS #156 (yarikoptic)
- Fix example misalignment #155 (DimitriPapadopoulos)
- Update Pipfile.lock #144 (franklin-feingold)
- [MRG] clarify decimal sep and numerical notation convention #143 (sappelhoff)
- [MRG] clarify encoding of README, CHANGES, TSV, and JSON files #140 (sappelhoff)
- Update site_name and release protocol #137 (franklin-feingold)
- BF: Example for IntendedFor was missing session indicator in the filename #129 (yarikoptic)
- [ENH] Add "_phase" suffix to func datatype for functional phase data #128 (tsalo)
- Update to Release_Protocol.md #126 (franklin-feingold)
- Update tag naming convention #123 (chrisgorgo)
- [MRG] Merge bep006 and bep010 #108 (sappelhoff)
- Adding formal decision-making rules #104 (chrisgorgo)
- [MRG] number of small corrections to the specification #98 (robertoostenveld)
v1.1.2 (2019-01-10)
- Update 01-contributors.md #120 (oesteban)
- Global fields in data dictionaries #117 (chrisgorgo)
- Propose BEP026 MER #116 (greydongilmore)
- Remove duplicate entries in MEG table #113 (franklin-feingold)
- Propose BEP025 MIDS #110 (josator2)
- repair links #106 (sappelhoff)
- Autogenerate CHANGES.md #103 (franklin-feingold)
- Added contributor information #100 (jgrethe)
- ENH: First(?) good practice recommendation. No excessive overrides in Inheritance principle #99 (yarikoptic)
- adding extensions page #97 (choldgraf)
- Fix up some urls (as detected to be broken/inconsistent #95 (yarikoptic)
- Change BEP numbers to include MRS #94 (Hboni)
- RF harmonize and thus shorten templates etc #93 (yarikoptic)
- put links and some text into README #91 (sappelhoff)
- Add extension proposal in 01-introduction.md #88 (Hboni)
- additional table to recap 'volume acquisition timing' #87 (Remi-Gau)
- Small typo in "scanning sequence" DICOM tag #84 (Remi-Gau)
- Update 01-contributors.md #83 (teonbrooks)
- Added CBV contrast #82 (TheChymera)
- Add CC-BY 4.0 license #81 (KirstieJane)
- Fix Travis break #80 (franklin-feingold)
- ENH: allow _dir for other EPI (func, dwi) sequences #78 (yarikoptic)
- Added appendix to mkdocs and added some internal links #77 (franklin-feingold)
- DOC: added JC Houde as contributor. #76 (jchoude)
- Updated my contributions #75 (nicholst)
- update HED appendix #74 (sappelhoff)
- [MRG] unicode: replace greek mu and omega by micro and ohm signs #73 (sappelhoff)
- Update 01-contributors.md #72 (francopestilli)
- add ce-\<label> for fmri data #70 (dasturge)
- pin pip version #68 (chrisgorgo)
- Fix link in index #46 (chrisgorgo)
- edit contributing md #44 (Park-Patrick)
- Mkdocs configuration and RTD setup #42 (choldgraf)
- Move definitions, compulsory, and raw/derivatives sections to principles #40 (chrisgorgo)
- Remove duplicate section #39 (chrisgorgo)
- mkdocs rendering #36 (chrisgorgo)
- Style consistency #35 (chrisgorgo)
- Renaming files to conform with style guide #34 (chrisgorgo)
- enable travis cache #32 (chrisgorgo)
- FIX - corrected link that is shown for CC0 #31 (robertoostenveld)
- [WIP] added linter integration via travis #30 (chrisgorgo)
- Cleanup #29 (chrisgorgo)
- [MRG] split intro, commons, mr, and meg into folder from specification.md #28 (teonbrooks)
- Add some bids starter kit contributors #27 (KirstieJane)
- Embedded footnotes into text #25 (franklin-feingold)
- Making HED Strategy Guide link prettier #24 (fake-filo)
- Fix/more cleanup #21 (chrisgorgo)
- formatted MEG (8.4) #17 (franklin-feingold)
- small fixes #16 (chrisgorgo)
- Add meg img #14 (sappelhoff)
- [WIP] Cleaning up the specification #13 (chrisgorgo)
- Adding code of conduct #6 (chrisgorgo)
- Renaming the main document #1 (chrisgorgo)
1.1.1
-
Improved the MEG landmark coordinates description.
-
Replaced ManufacturersCapModelName in meg.json with CapManufacturer and CapManufacturersModelName.
-
Remove EEGSamplingFrequency and ManufacturersAmplifierModelName from the meg.json.
-
Improved the behavioral data description.
1.1.0
- Added support for MEG data (merged BEP008)
- Added SequenceName field.
- Added support for describing events with Hierarchical Event Descriptors [4.3 Task events].
- Added VolumeTiming and AcquisitionDuration fields [4.1 Task (including resting state) imaging data].
- Added DwellTime field.
1.0.2
-
Added support for high resolution (anatomical) T2star images [4.1 Anatomy imaging data].
-
Added support for multiple defacing masks [4.1 Anatomy imaging data].
-
Added optional key and metadata field for contrast enhanced structural scans [4.1 Anatomy imaging data]
-
Added DelayTime field [4.1 Task (including resting state) imaging data].
-
Added support for multi echo BOLD data [4.1 Task (including resting state) imaging data].
1.0.1
-
Added InstitutionName field [4.1 Task (including resting state) imaging data].
-
Added InstitutionAddress field [4.1 Task (including resting state) imaging data].
-
Added DeviceSerialNumber field [4.1 Task (including resting state) imaging data].
-
Added NumberOfVolumesDiscardedByUser and NumberOfVolumesDiscardedByScanner field [4.1 Task (including resting state) imaging data].
-
Added TotalReadoutTime to functional images metadata list [4.1 Task (including resting state) imaging data].
1.0.1-rc1
-
Added T1 Rho maps [4.1 Anatomy imaging data].
-
Added support for phenotypic information split into multiple files [3.2 Participant key file].
-
Added recommendations for multi site datasets
-
Added SoftwareVersions
-
Added run-<run_index> to the phase encoding maps. Improved the description.
-
Added InversionTime metadata key.
-
Clarification on the source vs raw language.
-
Added trial_type column to the event files.
-
Added missing sub-<participant_label> in behavioral data file names
-
Added ability to store stimuli files.
-
Clarified the language describing allowed subject labels.
-
Added quantitative proton density maps.
1.0.0
-
Added ability to specify fieldmaps acquired with multiple parameter sets.
-
Added ability to have multiple runs of the same fieldmap.
-
Added FLASH anatomical images.
1.0.0-rc4
-
Replaced links to neurolex with explicit DICOM Tags.
-
Added sourcedata.
-
Added data dictionaries.
-
Be more explicit about contents of JSON files for structural (anatomical) scans.
1.0.0-rc3
-
Renamed PhaseEncodingDirection values from “x”, “y”, “z” to “i”, “j”, “k” to avoid confusion with FSL parameters
-
Renamed SliceEncodingDirection values from “x”, “y”, “z” to “i”, “j”, “k”
1.0.0-rc2
-
Removed the requirement that TSV files cannot include more than two consecutive spaces.
-
Refactor of the definitions sections (copied from the manuscript)
-
Make support for uncompressed .nii files more explicit.
-
Added BIDSVersion to dataset.json
-
Remove the statement that SliceEncodingDirection is necessary for slice time correction
-
Change dicom converter recommendation from dcmstack to dcm2nii and dicm2nii following interactions with the community (see https://github.com/moloney/dcmstack/issues/39 and https://github.com/neurolabusc/dcm2niix/issues/4).
-
Added section on behavioral experiments with no accompanying MRI acquisition
-
Add _magnitude.nii[.gz] image for GE type fieldmaps.
-
Replaced EchoTimeDifference with EchoTime1 and EchoTime2 (SPM toolbox requires this input).
-
Added support for single band reference image for DWI.
-
Added DatasetDOI field in the dataset description.
-
Added description of more metadata fields relevant to DWI fieldmap correction.
-
PhaseEncodingDirection is now expressed in “x”, “y” etc. instead of “PA” “RL” for DWI scans (so it’s the same as BOLD scans)
-
Added rec-<label> flag to BOLD files to distinguish between different reconstruction algorithms (analogous to anatomical scans).
-
Added recommendation to use _physio suffix for continuous recordings of motion parameters obtained by the scanner side reconstruction algorithms.
1.0.0-rc1
- Initial release
* This Change Log was automatically generated by github_changelog_generator