Intracranial Electroencephalography
Support for Intracranial Electroencephalography (iEEG) was developed as a BIDS Extension Proposal. Please cite the following paper when referring to this part of the standard in context of the academic literature:
Holdgraf, C., Appelhoff, S., Bickel, S., Bouchard, K., D'Ambrosio, S., David, O., Devinsky, O., Dichter, B., Flinker, A., Foster, B. L., Gorgolewski, K. J., Groen, I., Groppe, D., Gunduz, A., Hamilton, L., Honey, C. J., Jas, M., Knight, R., Lauchaux, J.-P., Lau, J. C., Lee-Messer, C., Lundstrom, B. N., Miller, K. J., Ojemann, J. G., Oostenveld, R., Petridou, N., Piantoni, G., Pigorini, A., Pouratian, N., Ramsey, N. F., Stolk, A., Swann, N. C., Tadel, F., Voytek, B., Wandell, B. A., Winawer, J., Whitaker, K., Zehl, L., Hermes, D. (2019). iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology. Scientific data, 6. doi: 10.1038/s41597-019-0105-7
iEEG recording data
Template:
sub-<label>/
[ses-<label>]/
ieeg/
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_ieeg.<manufacturer_specific_extension>
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_ieeg.json
The iEEG community uses a variety of formats for storing raw data, and there is no single standard that all researchers agree on. For BIDS, iEEG data MUST be stored in one of the following formats:
-
European Data Format (
.edf
) -
BrainVision Core Data Format (
.vhdr
,.eeg
,.vmrk
) by Brain Products GmbH -
The format used by the MATLAB toolbox EEGLAB (
.set
and.fdt
files) -
Neurodata Without Borders (
.nwb
) -
MEF3 (
.mef
)
It is RECOMMENDED to use the European data format, or the BrainVision data format. It is furthermore discouraged to use the other accepted formats over these RECOMMENDED formats, particularly because there are conversion scripts available in most commonly used programming languages to convert data into the RECOMMENDED formats.
Future versions of BIDS may extend this list of supported file formats. File formats for future consideration MUST have open access documentation, MUST have open source implementation for both reading and writing in at least two programming languages and SHOULD be widely supported in multiple software packages. Other formats that may be considered in the future should have a clear added advantage over the existing formats and should have wide adoption in the BIDS community.
The data format in which the data was originally stored is especially valuable
in case conversion elicits the loss of crucial metadata specific to
manufacturers and specific iEEG systems. We also encourage users to provide
additional meta information extracted from the manufacturer-specific data files
in the sidecar JSON file. Other relevant files MAY be included alongside the
original iEEG data in the /sourcedata
directory.
Note the RecordingType, which depends on whether the data stream on disk is interrupted or not. Continuous data is by definition 1 segment without interruption. Epoched data consists of multiple segments that all have the same length (e.g., corresponding to trials) and that have gaps in between. Discontinuous data consists of multiple segments of different length, for example due to a pause in the acquisition.
Terminology: Electrodes vs. Channels
For proper documentation of iEEG recording metadata it is important to understand the difference between electrode and channel: an iEEG electrode is placed on or in the brain, whereas a channel is the combination of the analog differential amplifier and analog-to-digital converter that result in a potential (voltage) difference that is stored in the iEEG dataset. We employ the following short definitions:
-
Electrode = A single point of contact between the acquisition system and the recording site (e.g., scalp, neural tissue, ...). Multiple electrodes can be organized as arrays, grids, leads, strips, probes, shafts, caps (for EEG), etc.
-
Channel = A single analog-to-digital converter in the recording system that regularly samples the value of a transducer, which results in the signal being represented as a time series in the digitized data. This can be connected to two electrodes (to measure the potential difference between them), a magnetic field or magnetic gradient sensor, temperature sensor, accelerometer, etc.
Although the reference and ground electrodes are often referred to as channels, they are in most common iEEG systems not recorded by themselves. Therefore they are not represented as channels in the data. The type of referencing for all channels and optionally the location of the reference electrode and the location of the ground electrode MAY be specified.
Sidecar JSON (*_ieeg.json
)
For consistency between studies and institutions, we encourage users to extract the values of metadata fields from the actual raw data. Whenever possible, please avoid using ad hoc wording.
Generic fields MUST be present:
Field name | Definition |
---|---|
TaskName | REQUIRED. Name of the task (for resting state use the "rest" prefix). No two tasks should have the same name. The task label included in the file name is derived from this TaskName field by removing all non-alphanumeric ([a-zA-Z0-9] ) characters. For example TaskName faces n-back will correspond to task label facesnback . Note this does not have to be a "behavioral task" that subjects perform, but can reflect some information about the conditions present when the data was acquired (e.g., "rest", "sleep", or "seizure"). |
SHOULD be present: For consistency between studies and institutions, we encourage users to extract the values of these fields from the actual raw data. Whenever possible, please avoid using ad hoc wording.
Field name | Definition |
---|---|
InstitutionName | RECOMMENDED. The name of the institution in charge of the equipment that produced the composite instances. |
InstitutionAddress | RECOMMENDED. The address of the institution in charge of the equipment that produced the composite instances. |
Manufacturer | RECOMMENDED. Manufacturer of the amplifier system (e.g., "TDT, Blackrock"). |
ManufacturersModelName | RECOMMENDED. Manufacturer's designation of the iEEG amplifier model. |
SoftwareVersions | RECOMMENDED. Manufacturer's designation of the acquisition software. |
TaskDescription | RECOMMENDED. Longer description of the task. |
Instructions | RECOMMENDED. Text of the instructions given to participants before the recording. This is especially important in context of resting state and distinguishing between eyes open and eyes closed paradigms. |
CogAtlasID | RECOMMENDED. URL of the corresponding Cognitive Atlas Task term. |
CogPOID | RECOMMENDED. URL of the corresponding CogPO term. |
DeviceSerialNumber | RECOMMENDED. The serial number of the equipment that produced the composite instances. A pseudonym can also be used to prevent the equipment from being identifiable, as long as each pseudonym is unique within the dataset. |
Specific iEEG fields MUST be present:
Field name | Definition |
---|---|
iEEGReference | REQUIRED. General description of the reference scheme used and (when applicable) of location of the reference electrode in the raw recordings (e.g., "left mastoid", "bipolar", "T01" for electrode with name T01, "intracranial electrode on top of a grid, not included with data", "upside down electrode"). If different channels have a different reference, this field should have a general description and the channel specific reference should be defined in the _channels.tsv file. |
SamplingFrequency | REQUIRED. Sampling frequency (in Hz) of all the iEEG channels in the recording (e.g., 2400). All other channels should have frequency specified as well in the channels.tsv file. |
PowerLineFrequency | REQUIRED. Frequency (in Hz) of the power grid where the iEEG recording was done (i.e., 50 or 60). |
SoftwareFilters | REQUIRED. A JSON object of temporal software filters applied, or "n/a" if the data is not available. Each key:value pair in the JSON object is a name of the filter and an object in which its parameters are defined as key:value pairs. E.g., {"HighPass": {"HalfAmplitudeCutOffHz": 1, "RollOff": "6dB/Octave"}} |
Specific iEEG fields SHOULD be present:
Field name | Definition |
---|---|
DCOffsetCorrection | RECOMMENDED. A description of the method (if any) used to correct for a DC offset. If the method used was subtracting the mean value for each channel, use "mean". |
HardwareFilters | RECOMMENDED.A JSON object of temporal hardware filters applied, or "n/a" if the data is not available. Each key:value pair in the JSON object is a name of the filter and an object in which its parameters are defined as key:value pairs. E.g., {"Highpass RC filter": {"Half amplitude cutoff (Hz)": 0.0159, "Roll-off": "6dB/Octave"}} |
ElectrodeManufacturer | RECOMMENDED. can be used if all electrodes are of the same manufacturer (e.g., AD-TECH, DIXI). If electrodes of different manufacturers are used, please use the corresponding table in the _electrodes.tsv file. |
ElectrodeManufacturersModelName | RECOMMENDED. If different electrode types are used, please use the corresponding table in the _electrodes.tsv file. |
ECOGChannelCount | RECOMMENDED. Number of iEEG surface channels included in the recording (e.g., 120). |
SEEGChannelCount | RECOMMENDED. Number of iEEG depth channels included in the recording (e.g., 8). |
EEGChannelCount | RECOMMENDED. Number of scalp EEG channels recorded simultaneously (e.g., 21). |
EOGChannelCount | RECOMMENDED. Number of EOG channels. |
ECGChannelCount | RECOMMENDED. Number of ECG channels. |
EMGChannelCount | RECOMMENDED. Number of EMG channels. |
MiscChannelCount | RECOMMENDED. Number of miscellaneous analog channels for auxiliary signals. |
TriggerChannelCount | RECOMMENDED. Number of channels for digital (TTL bit level) triggers. |
RecordingDuration | RECOMMENDED. Length of the recording in seconds (e.g., 3600). |
RecordingType | RECOMMENDED. Defines whether the recording is "continuous", "discontinuous" or "epoched"; this latter limited to time windows about events of interest (e.g., stimulus presentations, subject responses etc.) |
EpochLength | RECOMMENDED. Duration of individual epochs in seconds (e.g., 1) in case of epoched data. If recording was continuous or discontinuous, leave out the field. |
iEEGGround | RECOMMENDED. Description of the location of the ground electrode ("placed on right mastoid (M2)"). |
iEEGPlacementScheme | RECOMMENDED. Freeform description of the placement of the iEEG electrodes. Left/right/bilateral/depth/surface (e.g., "left frontal grid and bilateral hippocampal depth" or "surface strip and STN depth" or "clinical indication bitemporal, bilateral temporal strips and left grid"). |
iEEGElectrodeGroups | RECOMMENDED. Field to describe the way electrodes are grouped into strips, grids or depth probes e.g., {'grid1': "10x8 grid on left temporal pole", 'strip2': "1x8 electrode strip on xxx"}. |
SubjectArtefactDescription | RECOMMENDED. Freeform description of the observed subject artefact and its possible cause (e.g., "door open", "nurse walked into room at 2 min", "seizure at 10 min"). If this field is left empty, it will be interpreted as absence of artifacts. |
Specific iEEG fields MAY be present:
Field name | Definition |
---|---|
ElectricalStimulation | OPTIONAL. Boolean field to specify if electrical stimulation was done during the recording (options are "true" or "false"). Parameters for event-like stimulation should be specified in the _events.tsv file (see example below). |
ElectricalStimulationParameters | OPTIONAL. Free form description of stimulation parameters, such as frequency, shape etc. Specific onsets can be specified in the _events.tsv file. Specific shapes can be described here in freeform text. |
Example:
{
"TaskName":"visual",
"InstitutionName":"Stanford Hospital and Clinics",
"InstitutionAddress":"300 Pasteur Dr, Stanford, CA 94305",
"Manufacturer":"Tucker Davis Technologies",
"ManufacturersModelName":"n/a",
"TaskDescription":"visual gratings and noise patterns",
"Instructions":"look at the dot in the center of the screen and press the button when it changes color",
"iEEGReference":"left mastoid",
"SamplingFrequency":1000,
"PowerLineFrequency":60,
"SoftwareFilters":"n/a",
"DCOffsetCorrection":0,
"HardwareFilters":{"Highpass RC filter": {"Half amplitude cutoff (Hz)": 0.0159, "Roll-off": "6dBOctave"}},
"ElectrodeManufacturer":"AdTech",
"ECOGChannelCount":120,
"SEEGChannelCount":0,
"EEGChannelCount":0,
"EOGChannelCount":0,
"ECGChannelCount":0,
"EMGChannelCount":0,
"MiscChannelCount":0,
"TriggerChannelCount":0,
"RecordingDuration":233.639,
"RecordingType":"continuous",
"iEEGGround":"placed on the right mastoid",
"iEEGPlacementScheme":"right occipital temporal surface",
"ElectricalStimulation":false
}
Note that the date and time information SHOULD be stored in the Study key file
(scans.tsv
). As it is indicated
there, date time information MUST be expressed in the following format
YYYY-MM-DDThh:mm:ss
(ISO8601 date-time format). For
example: 2009-06-15T13:45:30. It does not need to be fully detailed, depending
on local REB/IRB ethics board policy.
Channels description (*_channels.tsv
)
Template:
sub-<label>/
[ses-<label>]/
ieeg/
[sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_channels.tsv]
A channel represents one time series recorded with the recording system (for
example, there can be a bipolar channel, recorded from two electrodes or contact
points on the tissue).
Although this information can often be extracted from the iEEG recording,
listing it in a simple .tsv
document makes it easy to browse or search (e.g.,
searching for recordings with a sampling frequency of >=1000 Hz).
Hence, the channels.tsv is RECOMMENDED.
The two required columns are channel name
and type
.
Channels SHOULD appear in the table in the same order they do in the iEEG data
file.
Any number of additional columns may be provided to provide additional
information about the channels.
Note that electrode positions SHOULD NOT be added to this file but to
*_electrodes.tsv
.
The columns of the Channels description table stored in *_channels.tsv are:
MUST be present:
Column name | Definition |
---|---|
name | REQUIRED. Label of the channel. The label must correspond to _electrodes.tsv name and all ieeg type channels are required to have a position. The reference channel name MAY be provided in the reference column. |
type | REQUIRED. Type of channel, see below for adequate keywords in this field. |
units | REQUIRED. Physical unit of the value represented in this channel, e.g., V for Volt, specified according to the SI unit symbol and possibly prefix symbol (e.g., mV, μV), or as a derived SI unit (e.g., fT/cm). For guidelines for Units and Prefixes see Appendix V. |
low_cutoff | REQUIRED. Frequencies used for the low pass filter applied to the channel in Hz. If no low pass filter was applied, use n/a . Note that anti-alias is a low pass filter, specify its frequencies here if applicable. |
high_cutoff | REQUIRED. Frequencies used for the high pass filter applied to the channel in Hz. If no high pass filter applied, use n/a . |
SHOULD be present:
Column name | Definition |
---|---|
reference | OPTIONAL. Specification of the reference (e.g., 'mastoid', 'ElectrodeName01', 'intracranial', 'CAR', 'other', 'n/a'). If the channel is not an electrode channel (e.g., a microphone channel) use n/a . |
group | OPTIONAL. Which group of channels (grid/strip/seeg/depth) this channel belongs to. This is relevant because one group has one cable-bundle and noise can be shared. This can be a name or number. Note that any groups specified in _electrodes.tsv must match those present here. |
sampling_frequency | OPTIONAL. Sampling rate of the channel in Hz. |
description | OPTIONAL. Brief free-text description of the channel, or other information of interest (e.g., position (e.g., "left lateral temporal surface", etc.). |
notch | OPTIONAL. Frequencies used for the notch filter applied to the channel, in Hz. If no notch filter applied, use n/a. |
status | OPTIONAL. Data quality observed on the channel (good/bad). A channel is considered bad if its data quality is compromised by excessive noise. Description of noise type SHOULD be provided in [status_description] . |
status_description | OPTIONAL. Freeform text description of noise or artifact affecting data quality on the channel. It is meant to explain why the channel was declared bad in [status] . |
Example sub-01_channels.tsv
:
name type units low_cutoff high_cutoff status status_description
LT01 ECOG μV 300 0.11 good n/a
LT02 ECOG μV 300 0.11 bad broken
H01 SEEG μV 300 0.11 bad line_noise
ECG1 ECG μV n/a 0.11 good n/a
TR1 TRIG n/a n/a n/a good n/a
Keyword | Description |
---|---|
EEG | Electrode channel from electroencephalogram |
ECOG | Electrode channel from electrocorticogram (intracranial) |
SEEG | Electrode channel from stereo-electroencephalogram (intracranial) |
DBS | Electrode channel from deep brain stimulation electrode (intracranial) |
VEOG | Vertical EOG (electrooculogram) |
HEOG | Horizontal EOG |
EOG | Generic EOG channel if HEOG or VEOG information not available |
ECG | ElectroCardioGram (heart) |
EMG | ElectroMyoGram (muscle) |
TRIG | System Triggers |
AUDIO | Audio signal |
PD | Photodiode |
EYEGAZE | Eye Tracker gaze |
PUPIL | Eye Tracker pupil diameter |
MISC | Miscellaneous |
SYSCLOCK | System time showing elapsed time since trial started |
ADC | Analog to Digital input |
DAC | Digital to Analog output |
REF | Reference channel |
OTHER | Any other type of channel |
The free text field for the channel description can for example be specified as intracranial, stimulus, response, vertical EOG, horizontal EOG, skin conductance, eyetracker, etc.
Electrode description (*_electrodes.tsv
)
Template:
sub-<label>/
[ses-<label>]/
ieeg/
sub-<label>[_ses-<label>][_space-<label>]_electrodes.tsv
File that gives the location, size and other properties of iEEG electrodes. Note
that coordinates are expected in cartesian coordinates according to the
iEEGCoordinateSystem
and iEEGCoordinateSystemUnits
fields in
*_coordsystem.json
. If an *_electrodes.tsv
file is specified, a
*_coordsystem.json
file MUST be specified as well.
The optional space label (*[_space-<label>]_electrodes.tsv
) can be used to
indicate the way in which electrode positions are interpreted. The space label
needs to be taken from the list in
Appendix VIII
For examples:
-
_space-MNI152Lin
(electrodes are coregistred and scaled to a specific MNI template) -
_space-Talairach
(electrodes are coregistred and scaled to Talairach space)
When referring to the *_electrodes.tsv
file in a certain space as defined
above, the space-<label>
of the accompanying *_coordsystem.json
MUST
correspond.
For example:
sub-01_space-Talairach_electrodes.tsv
sub-01_space-Talairach_coordsystem.json
The order of the required columns in the *_electrodes.tsv
file MUST be as
listed below.
MUST be present:
Column name | Definition |
---|---|
name | REQUIRED. Name of the electrode contact point. |
x | REQUIRED. X position. The positions of the center of each electrode in xyz space. Units are in millimeters or pixels and are specified in _*space- |
y | REQUIRED. Y position. |
z | REQUIRED. Z position. If electrodes are in 2D space this should be a column of n/a values. |
size | REQUIRED. Surface area of the electrode, in mm^2. |
SHOULD be present:
Column name | Definition |
---|---|
material | OPTIONAL. Material of the electrodes. |
manufacturer | OPTIONAL. Recommended field to specify the manufacturer for each electrode. Can be used if electrodes were manufactured by more than one company. |
group | OPTIONAL. Optional field to specify the group that the electrode is a part of. Note that any group specified here should match a group specified in _channels.tsv . |
hemisphere | OPTIONAL. Optional field to specify the hemisphere in which the electrode is placed, one of ['L' or 'R'] (use capital). |
MAY be present:
Column name | Definition |
---|---|
type | OPTIONAL. Optional type of the electrode, e.g., cup, ring, clip-on, wire, needle, ... |
impedance | OPTIONAL. Impedance of the electrode in kOhm. |
dimension | OPTIONAL. Size of the group (grid/strip/probe) that this electrode belongs to. Must be of form [AxB] with the smallest dimension first (e.g., [1x8] ). |
Example:
name x y z size manufacturer
LT01 19 -39 -16 2.3 Integra
LT02 23 -40 -19 2.3 Integra
H01 27 -42 -21 5 AdTech
Coordinate System JSON (*_coordsystem.json
)
Template:
sub-<label>/
[ses-<label>]/
ieeg/
sub-<label>[_ses-<label>][_space-<label>]_coordsystem.json
This _coordsystem.json
file contains the coordinate system in which electrode
positions are expressed. The associated MRI, CT, X-Ray, or operative photo can
also be specified.
General fields:
Field name | Definition |
---|---|
IntendedFor | RECOMMENDED. This can be an MRI/CT or a file containing the operative photo, x-ray or drawing with path relative to the project folder. If only a surface reconstruction is available, this should point to the surface reconstruction file. Note that this file should have the same coordinate system specified in iEEGCoordinateSystem . For example, T1: sub-<label>/ses-<label>/anat/sub-01_T1w.nii.gz Surface: /derivatives/surfaces/sub-<label>/ses-<label>/anat/sub-01_T1w_pial.R.surf.gii Operative photo: /sub-<label>/ses-<label>/ieeg/sub-0001_ses-01_acq-photo1_photo.jpg Talairach: /derivatives/surfaces/sub-Talairach/ses-01/anat/sub-Talairach_T1w_pial.R.surf.gii |
Fields relating to the iEEG electrode positions:
Field name | Definition |
---|---|
iEEGCoordinateSystem | REQUIRED. Defines the coordinate system for the iEEG electrodes. See Appendix VIII for a list of restricted keywords. If positions correspond to pixel indices in a 2D image (of either a volume-rendering, surface-rendering, operative photo, or operative drawing), this must be "Pixels". For more information, see the section on 2D coordinate systems |
iEEGCoordinateUnits | REQUIRED. Units of the _electrodes.tsv, MUST be "m", "mm", "cm" or "pixels". |
iEEGCoordinateSystemDescription | RECOMMENDED. Freeform text description or link to document describing the iEEG coordinate system system in detail (e.g., "Coordinate system with the origin at anterior commissure (AC), negative y-axis going through the posterior commissure (PC), z-axis going to a mid-hemisperic point which lies superior to the AC-PC line, x-axis going to the right"). |
iEEGCoordinateProcessingDescription | RECOMMENDED. Has any post-processing (such as projection) been done on the electrode positions (e.g., "surface_projection", "none"). |
iEEGCoordinateProcessingReference | RECOMMENDED. A reference to a paper that defines in more detail the method used to localize the electrodes and to post-process the electrode positions. . |
Recommended 3D coordinate systems
It is preferred that electrodes are localized in a 3D coordinate system (with respect to a pre- and/or post-operative anatomical MRI or CT scans or in a standard space as specified in BIDS Appendix VIII about preferred names of coordinate systems, such as ACPC).
Allowed 2D coordinate systems
If electrodes are localized in 2D space (only x and y are specified and z is n/a), then the positions in this file must correspond to the locations expressed in pixels on the photo/drawing/rendering of the electrodes on the brain. In this case, coordinates must be (row,column) pairs, with (0,0) corresponding to the upper left pixel and (N,0) corresponding to the lower left pixel.
Multiple coordinate systems
If electrode positions are known in multiple coordinate systems (e.g., MRI, CT
and MNI), these spaces can be distinguished by the optional [_space-<label>]
field, see the *_electrodes.tsv
-section
for more information. Note that the [_space-<label>]
fields must correspond
between *_electrodes.tsv
and *_coordsystem.json
if they refer to the same
data.
Example:
{
"IntendedFor": "/sub-01/ses-01/anat/sub-01_T1w.nii.gz",
"iEEGCoordinateSystem": "ACPC",
"iEEGCoordinateUnits": "mm",
"iEEGCoordinateSystemDescription": "Coordinate system with the origin at anterior commissure (AC), negative y-axis going through the posterior commissure (PC), z-axis going to a mid-hemisperic point which lies superior to the AC-PC line, x-axis going to the right",
"iEEGCoordinateProcessingDescription": "surface_projection",
"iEEGCoordinateProcessingReference": "Hermes et al., 2010 JNeuroMeth"
}
Photos of the electrode positions (*_photo.jpg
)
Template:
sub-<label>/
[ses-<label>]/
ieeg/
sub-<label>[_ses-<label>][_acq-<label]_photo.json
These can include photos of the electrodes on the brain surface, photos of anatomical features or landmarks (such as sulcal structure), and fiducials. Photos can also include an X-ray picture, a flatbed scan of a schematic drawing made during surgery, or screenshots of a brain rendering with electrode positions. The photos may need to be cropped and/or blurred to conceal identifying features or entirely omitted prior to sharing, depending on obtained consent.
If there are photos of the electrodes, the acquisition field should be specified with:
-
*_photo.jpg
in case of an operative photo -
*_acq-xray#_photo.jpg
in case of an x-ray picture -
*_acq-drawing#_photo.jpg
in case of a drawing or sketch of electrode placements -
*_acq-render#_photo.jpg
in case of a rendering
The session label may be used to specify when the photo was taken.
Example of the operative photo of ECoG electrodes (here is an annotated example in which electrodes and vasculature are marked, taken from Hermes et al., JNeuroMeth 2010).
sub-0001_ses-01_acq-photo1_photo.jpg
sub-0001_ses-01_acq-photo2_photo.jpg
Below is an example of a volume rendering of the cortical surface with a superimposed subdural electrode implantation. This map is often provided by the EEG technician and provided to the epileptologists (e.g., see Burneo JG et al. 2014 https://doi.org/10.1016/j.clineuro.2014.03.020).
sub-0002_ses-01_acq-render_photo.jpg
Electrical stimulation
In case of electrical stimulation of brain tissue by passing current through the
iEEG electrodes, and the electrical stimulation has an event structure (on-off,
onset, duration), the _events.tsv
file can contain the electrical stimulation
parameters in addition to other events. Note that these can be intermixed with
other task events. Electrical stimulation parameters can be described in columns
called electrical_stimulation_<label>
, with labels chosen by the researcher and
optionally defined in more detail in an accompanying _events.json
file (as
per the main BIDS spec). Functions for complex stimulation patterns can, similar
as when a video is presented, be stored in a folder in the /stimuli/
folder.
For example: /stimuli/electrical_stimulation_functions/biphasic.tsv
Example:
onset duration trial_type electrical_stimulation_type electrical_stimulation_site electrical_stimulation_current
1.2 0.001 electrical_stimulation biphasic LT01-LT02 0.005
1.3 0.001 electrical_stimulation biphasic LT01-LT02 0.005
2.2 0.001 electrical_stimulation biphasic LT02-LT03 0.005
4.2 1 electrical_stimulation complex LT02-LT03 n/a
15.2 3 auditory_stimulus n/a n/a n/a