Changelog
v1.9.0 (2023-11-20)
- [FIX] mention phenotype dir in folder structure #1644 (Remi-Gau)
- [ENH] add
ElectricalStimulation
and\*Parameters
metadata to MEEG jsons #1638 (sappelhoff) - [FIX] years and degrees Units and unit to be singular to match the rest #1631 (yarikoptic)
- [FIX] Hierarchical Event Descriptors (HED) page update #1623 (effigies)
- [ENH] Add
descriptions.tsv
file relating to thedesc-\<label\>
entity #1613 (CPernet) - [FIX] Do not require notch frequencies to be parsed as numbers, accommodating multiples #1605 (effigies)
- [ENH] Allow Levels field of column descriptions to be objects with TermURLs for each level #1603 (Remi-Gau)
- [ENH] Add optional low_cutoff and high_cutoff columns for fnirs channels.tsv #1597 (Remi-Gau)
- [FIX] Recommend SliceTiming if MRAcquisitionType is "2D" #1594 (tsalo)
- [ENH] Add Level objects to channels.json for motion #1591 (effigies)
- [ENH] Add "chunk" entity to MRI datatype #1586 (valosekj)
- [SCHEMA][ENH] Remove atlas entity and replace it with seg in prep of BEP038 #1579 (melanieganz)
- [FIX] Correct PDw suffix description #1578 (jeremie-fouquet)
- [FIX] improve longitudinal example #1576 (Remi-Gau)
- [INFRA] Adds Kim Ray as maintainer. #1571 (arokem)
- [ENH] Allow for "echo" entity to be used with T1w and other nonparametric anatomical suffixes #1570 (yarikoptic)
- [FIX] Update
templates
in modality-agnostic-files #1564 (sappelhoff) - [FIX] Clarify that electrodes.tsv is optional for MEG, for use with simultaneous (i)EEG #1555 (effigies)
- [ENH] Allow UNKNOWN and NONE ContrastBolusIngredients #1547 (Remi-Gau)
- [FIX] Update links to BIDS examples #1545 (Remi-Gau)
- [ENH] add schema in appendix #1543 (Remi-Gau)
- [ENH] add "visual correction" and "head stabilization" metadata #1539 (Remi-Gau)
- [ENH] Clarify meaning of raw vs derivative datasets #1537 (CPernet)
- [FIX] match subject label in folder and filename in func example #1536 (Remi-Gau)
- [FIX] Trail MEG directory formats with
/
#1534 (effigies) - [ENH] Permit CITATION.cff as structured alternative to some dataset_description fields #1525 (effigies)
- [FIX] Add missing column description in physio example #1514 (sappelhoff)
- [ENH] Clarify that data files must be uniquely identified by entities/suffix #1508 (sappelhoff)
- [INFRA] Publish schema tools API docs to additional ReadTheDocs site #1491 (bendhouseart)
- [FIX] Remove references to unspecified aslcontext.json #1485 (Remi-Gau)
- ENH: Define channel column for events and Delimiter field for column descriptions #1483 (effigies)
- [FIX] Revert index (entity format) definition to be a non-negative number, permitting zero #1482 (TheChymera)
- [FIX] Clean up qMRI RB1COR notes #1465 (lukeje)
- [ENH] Allow fractional seconds in StartTime #1459 (sappelhoff)
- [MISC] consistently list filename templates;
ext
-->extension
;\_photo.jpg
-->\_photo.\<extension\>
#1458 (sappelhoff) - [FIX] Demote
sample
andvalue
columns inevents.tsv
from OPTIONAL to arbitrary #1457 (sappelhoff) - [ENH] Clarify shape of PDT2 images and recommend acq entity for split PDw/T2w images #1448 (effigies)
- [ENH] clarify guiding principles for requirement levels #1444 (sappelhoff)
- [FIX] Clarify that dataset_description.Genetics object is required for genetics data #1442 (sappelhoff)
- [ENH] Clarify that BIDS specification is in American English #1439 (yarikoptic)
- [MISC] Link to new BEP guidelines. #1426 (arokem)
- [FIX] reorganize anat filename templates #1419 (Remi-Gau)
- [FIX] Rename
channels.tsv
column:orientation\_component
tocomponent
#1417 (sjeung) - [ENH] Some missing docstrings for bidsschematools #1413 (anibalsolon)
- [FIX] fixing some minor issues introduced recently #1411 (yarikoptic)
- [ENH] Add paragraph about richness versus distinctness in filenames #1392 (CPernet)
- [FIX] Updated HED score library version #1390 (VisLab)
- [FIX] Updated links and fixed typos in hed appendix #1383 (VisLab)
- [ENH] add screen parameters metadata #1369 (Remi-Gau)
- [MISC] allow for any "recording" file to be listed in _scans.tsv not just "neural recording" #1368 (yarikoptic)
- [FIX] wrong usage of DOI in SourceDatasets example #1361 (sappelhoff)
- [FIX] make references to Neuromag/Elekta/MEGIN consistent #1359 (sappelhoff)
- [ENH] Add reference for ASL BEP #1357 (Remi-Gau)
- [FIX] remove redundant entity definitions in behavioral page #1356 (Remi-Gau)
- [FIX] add missing processing entity for MEG physio files and render physio filename templates for fNIRS #1355 (Remi-Gau)
- [ENH] Recommend gzip header fields be set to empty values #1349 (kousu)
- [FIX] clarify TriggerChannelCount and TRIG type #1342 (sappelhoff)
- [ENH] Add qMRI fieldmap filename templates #1336 (Remi-Gau)
- [ENH] Introduce GIFTI formats in derivatives #1333 (effigies)
- [ENH] Add ParallelReductionFactorOutOfPlane to MRI metadata #1221 (lukeje)
- [ENH][SCHEMA] Adding an OPTIONAL
\_task-\<label\>
to structural MRI acquisitions #1185 (melanieganz) - [INFRA] use tributors to list contributors and CITATION.cff for referencing #1115 (Remi-Gau)
- [ENH] Extend BIDS for Motion data (BEP029) #981 (JuliusWelzel)
- [SCHEMA] Add full object definitions for valid values in schema #919 (tsalo)
v1.8.0 (2022-10-29)
- [FIX] Drop the functional and f for NIRS #1325 (rob-luke)
- [FIX][SCHEMA] Add conditionals for PET ReconMethod* and ReconFilter #1299 (bendhouseart)
- [ENH] use schema to mention which "top directories" are allowed #1289 (Remi-Gau)
- [ENH] Add glossary links to all tables #1268 (tsalo)
- [ENH] Remove redundant entity definitions on MRI page #1265 (tsalo)
- [ENH] Standardize and organize entity descriptions #1264 (tsalo)
- [ENH] Add filename template legend #1259 (Remi-Gau)
- [MISC] Reorder appendices #1256 (tsalo)
- [MISC] Clarify: FieldMap PE technique --> no SPM #1253 (CPernet)
- [MISC] Adding qMRI BIDS article reference (BEP001) #1251 (agahkarakuzu)
- [ENH] Link to filename element definitions in filename templates #1228 (tsalo)
- [MISC] Remove label format and inheritance principle redundancies in fMRI section #1197 (Remi-Gau)
- [ENH] add task metadata to PET #1196 (Remi-Gau)
- [FIX] clarify which file to list in scans.tsv for file formats with multiple files #1178 (sappelhoff)
- [FIX] add recommendation to fully omit non-compulsory data that is n/a #1171 (sappelhoff)
- [FIX] Discourage use of "sample" in events if sampling frequency is ambiguous, add guidelines for precision #1140 (sappelhoff)
- [FIX] Clarify MEG empty-room recommendations #1125 (robertoostenveld)
- [FIX] clarify no blank and duplicated headers in TSV #1116 (sappelhoff)
- [ENH] Added the specification for using HED libraries in BIDS #1106 (VisLab)
- [ENH] Microscopy: NGFF format support #1104 (TheChymera)
- [ENH] Add Microscopy-BIDS citation #1102 (mariehbourget)
- [FIX] MEG link typo #1100 (xi)
- [FIX] IntendedFor in (i)EEG is dataset relative #1093 (sappelhoff)
- [MISC] make dataset_description.Authors RECOMMENDED #1092 (sappelhoff)
- [ENH] adding optional _rec-label to DWI #1090 (dorahermes)
- [ENH] State of the schema sprint #1075 (effigies)
- [MISC] Preface each macro call with comment #1052 (Remi-Gau)
- [ENH] allow for .png and .tif in eeg/ieeg/meg as allowed for micr #1049 (yarikoptic)
- [FIX] typo in "rawdata" example #1045 (sappelhoff)
- [MISC] consistently use "directory" instead of "folder" as a term #1044 (sappelhoff)
- [MISC] Update CODEOWNERS #1040 (erdalkaraca)
- [ENH] Allow README file extensions. #1033 (mateuszpawlik)
- [MISC] Rewrite and update html build instructions #1032 (sappelhoff)
- [FIX] Clarify that BIDS standard template data is to be in scanner coordinates (MEG, iEEG, EEG) #1031 (alexrockhill)
- [FIX] Add coordsystem-specific definition of DigitizedHeadPoints #1023 (tsalo)
- [FIX] PET Spec; added known DICOM tags, fixed tag error, updated citation, clarified scale factor. #1021 (bendhouseart)
- [MISC] clarify copyright for logo #1019 (sappelhoff)
- [FIX] Change recording entity to REQUIRED for pet/blood modality #1005 (ghisvail)
- [ENH] Microscopy: Add IntendedFor metadata field to photo files #1000 (mariehbourget)
- [ENH] Introduce the atlas entity for derivatives data #997 (sebastientourbier)
- [ENH] Clearly define "entity" in common principles #947 (Lestropie)
- [ENH] Add BIDS URIs and deprecate relative paths, RawSources and (possibly unused) BasedOn #918 (effigies)
- [ENH] BEP030: Functional Near-Infrared Spectroscopy #802 (rob-luke)
- [FIX] Clarify run entity to accommodate multiple imaging modalities #760 (yarikoptic)
v1.7.0 (2022-02-15)
- [FIX] Use wikipedia for TIFF URL, adobe's page is 404ing now #1007 (yarikoptic)
- [FIX] update highlighting of examples, JSON keys and values, and TSV headers or values in the schema #998 (Remi-Gau)
- [MISC] minor wording and consistency improvements for channels.tsv in EEG, MEG, iEEG #993 (sappelhoff)
- [FIX] typo: extra sentence in anat section #991 (Remi-Gau)
- [FIX] Optionally support echo entity for VFA suffix #989 (TheChymera)
- [FIX] update definition acq_time for sessions.tsv #986 (Remi-Gau)
- [FIX] add microscopy to modalities in schema #984 (Remi-Gau)
- [MISC] update steering group composition #976 (Remi-Gau)
- [MISC] customize footer on html spec #975 (sappelhoff)
- [FIX] Update HED appendix to comply with current HED version #970 (VisLab)
- [ENH] Update B0Field metadata to accommodate single-blip fieldmaps #968 (effigies)
- [FIX] Reword front page #958 (arokem)
- [MISC] Update links to starter kit website #957 (effigies)
- [FIX] Entity table: Clarify meaning of empty cells #955 (Lestropie)
- [MISC] Add Eric Earl as a Maintainer #953 (ericearl)
- [FIX] Spelling errors in appendices #951 (Lestropie)
- [FIX] Broken hyperlink in entity list file #949 (Lestropie)
- [FIX] Rewrite inheritance principle #946 (Lestropie)
- [FIX] Typo: ECG_headshape #942 (Moo-Marc)
- [FIX] description: dwi is specialized T2 weighting, not T2* #939 (sappelhoff)
- [FIX] relax unrealistically strict requirements with ieeg channels.tsv 'name' column #938 (sappelhoff)
- [FIX] Add links from derivatives section to entity list #936 (sappelhoff)
- [FIX] Remove repeated words #934 (DimitriPapadopoulos)
- [FIX] Clarify that EDF/BDF files MUST have lower case extensions in BIDS #927 (adam2392)
- [ENH] Generate glossary page from schema #923 (tsalo)
- [ENH] Render valid value restrictions in tables based on object definitions in schema #921 (tsalo)
- [ENH] add
hemi
entity to schema #917 (Remi-Gau) - [ENH] update and reformat table for template in coordinate system page #903 (Remi-Gau)
- [ENH] add details for content of
\*\_beh.json
#902 (Remi-Gau) - [FIX] small typo in json example #897 (Remi-Gau)
- [INFRA] Document *.webm video files as binary #895 (DimitriPapadopoulos)
- [SCHEMA] Reorganize schema code into a package #892 (tsalo)
- [FIX] Clarify shifting dates RECOMMENDED, add example EDF #891 (sappelhoff)
- [INFRA] fix draft rendering css on mobile or when browser window is narrow #889 (sappelhoff)
- [MISC] Add an animated BIDS logo #886 (adswa)
- [SCHEMA] Consolidate schema files by term type #883 (tsalo)
- [ENH] BEP031: Microscopy #881 (mariehbourget)
- [INFRA] jQuery 3.4.1 → 3.6.0 #875 (DimitriPapadopoulos)
- [INFRA] Add "codespell" tool to CI checks to catch typos sooner #873 (DimitriPapadopoulos)
- [INFRA] Several style fixes (Flake8) for Python code in the repo #872 (DimitriPapadopoulos)
- [MISC] add Anthony as maintainer #868 (Remi-Gau)
- [MISC] add "forward slash" requirement for paths to common principles #867 (sappelhoff)
- [ENH] Add "ScanRAS" as an accepted coordinate frame for ieeg #866 (alexrockhill)
- [INFRA] Add .lgtm.yml file for better usage of LGTM CI tool #865 (DimitriPapadopoulos)
- [FIX] update physio bids name in longitudinal study page examples #863 (Remi-Gau)
- [INFRA] Enforce consistent line endings via .gitattributes #861 (DimitriPapadopoulos)
- [FIX] Clarify case collision intolerance as a file naming principle #858 (yarikoptic)
- [INFRA] LGTM recommendation: Unused local variable #853 (DimitriPapadopoulos)
- [INFRA] LGTM warning: Variable defined multiple times #851 (DimitriPapadopoulos)
- [FIX] Typos found by codespell #848 (DimitriPapadopoulos)
- [ENH] Add links to example datasets for each modality #845 (Remi-Gau)
- [INFRA] Add basic documentation on how to use metadata table macros #840 (Remi-Gau)
- [ENH] make "Institutional department name" available for all datatypes #839 (Remi-Gau)
- [INFRA] use macro to render examples in a "tree" like fashion #837 (Remi-Gau)
- [FIX] Add angio suffix to the non-parametric aMRI suffix table #835 (tsalo)
- [FIX] Remove last hardcoded suffix table #833 (tsalo)
- [MISC] make explicit that EDF+ (and for EEG: BDF+) are included in iEEG / EEG format requirements #831 (sappelhoff)
- [SCHEMA] Add TSV column files #827 (tsalo)
- [ENH] add metadata to PET calibration factor: "DoseCalibrationFactor" #825 (CPernet)
- [FIX] correct file location of scans.tsv file in example #824 (ghisvail)
- [MISC] update available datatypes in specification #819 (sappelhoff)
- [FIX] document required column order MEG, EEG, iEEG, PET, and fix typo iEEG #818 (sappelhoff)
- [ENH] BEP031 - New columns to participants.tsv file #816 (mariehbourget)
- [MISC] make table headers bold #815 (Remi-Gau)
- [FIX] What is a composite instance? Change to measurement for non MRI modalities? #813 (rob-luke)
- [ENH] BEP031 - New entity: sample and samples.tsv file #812 (mariehbourget)
- [ENH] Add device and acquisition metadata for physio files #806 (Remi-Gau)
- [MISC] Move section on sessions.tsv file: longitudinal files -> modality agnostic files #805 (Remi-Gau)
- [ENH] Make explicit that "task" metadata applies to "beh" modality #804 (Remi-Gau)
- [MISC] Make MRI-centric language more general in Events #801 (sappelhoff)
- [ENH] clarify that entities MUST be unique #800 (sappelhoff)
- [MISC] deprecate DCOffsetCorrection field from ieeg.json: Use SoftwareFilters field instead #799 (sappelhoff)
- [FIX] Deprecate ScanDate (PET) in favor of AcquisitionTime in scans.tsv files #798 (mnoergaard)
- [MISC] add IETF standard link for json #797 (sappelhoff)
- [INFRA] In PDF, color every other row in table in light gray fill #794 (sappelhoff)
- [MISC] add link to guide on how to write a good README #793 (sappelhoff)
- [SCHEMA] Apply schema rules to entity values #792 (tsalo)
- [INFRA] fix md ci and update ci badges #791 (sappelhoff)
- [SCHEMA] Use macro for filename templates in file collections appendix #787 (tsalo)
- [FIX] consistently refer to DICOM Tags throughout the specification #786 (Hboni)
- [FIX] Amend note about *b*-vecs on DWI specs #782 (oesteban)
- [INFRA] add CI to find trailing whitespace #780 (sappelhoff)
- [MISC] Add info on HED key to common principles #777 (sappelhoff)
- [ENH] add EEGLAB as valid coordinate system for EEG #775 (sappelhoff)
- [SCHEMA] Add metadata term files #774 (tsalo)
- [SCHEMA] Add suffix term files #772 (tsalo)
- [ENH] Allow encoding the fieldmapping intent of the protocol #622 (oesteban)
- [FIX] Correct iEEG example that contained double suffixes #463 (yarikoptic)
- [ENH] introduce GeneratedBy to "core" BIDS #440 (yarikoptic)
v1.6.0 (2021-04-22)
- [FIX] Typos discovered by codespell #784 (yarikoptic)
- [FIX] Rename "Unit" metadata to "Units" for consistency with existing fields #773 (effigies)
- [FIX] typo in pet: institution -> institutional #771 (sappelhoff)
- [INFRA] install git in linkchecker job #767 (sappelhoff)
- [INFRA] Fix CircleCI workflows #764 (sappelhoff)
- [INFRA] do not run remark on auto CHANGES #755 (sappelhoff)
- [FIX] Mix up (typo) between ficiduals and landmarks in EEG spec #754 (rob-luke)
- [INFRA] updating remark, CIs, contributor docs #745 (sappelhoff)
- [FIX] schema for i/eeg coordsys+elecs: sub-ses-acq-space are allowed entities #743 (sappelhoff)
- [MISC] move schema documentation into the schema directory #740 (Remi-Gau)
- [MISC] standardize string examples format in tables #739 (Remi-Gau)
- [MISC] Clarify participant_id in participants.tsv file if it exists #738 (adam2392)
- [FIX] split MEG files should be listed separately in scans.tsv #735 (eort)
- [FIX] 1) Clarify appropriate labels for space entity, 2) Clarify channels+electrodes do not have to match #734 (sappelhoff)
- [MISC] refactor stimuli mentioning sections in the events page #697 (Remi-Gau)
- [ENH] Bep 009: Positron Emission Tomography #633 (melanieganz)
v1.5.0 (2021-02-23)
- [MISC] Updated TotalAcquiredVolumes into TotalAcquiredPairs #742 (effigies)
- [SCHEMA] Update qMRI fieldmap schema #728 (effigies)
- [FIX] Add deprecated anatomical MRI suffixes back into schema #725 (tsalo)
- [FIX] Correct schema irregularities for func datatype #724 (tsalo)
- [FIX] Make flip optional for MP2RAGE #722 (tsalo)
- [FIX] Correct entity names in YAML files #720 (tsalo)
- [ENH] Clarify run indexing information for MRI acquisitions #719 (effigies)
- [ENH] Harmonize CoordinateSystem details for MRI, MEG, EEG, iEEG #717 (sappelhoff)
- [SCHEMA] Update entity YAML keys #714 (effigies)
- [MISC] Added full names for some contributors in .mailmap file #705 (yarikoptic)
- [INFRA] Migrate md and yml checks from travis to GH actions #693 (sappelhoff)
- [INFRA] Move part entity to before recording entity #692 (tsalo)
- [ENH] BEP001 - qMRI maps and some additional metadata #690 (agahkarakuzu)
- [ENH] BEP001 - Entity-linked file collections #688 (effigies)
- [ENH] BEP001 - New entities: inv & mt #681 (agahkarakuzu)
- [MISC] add contributing guidelines to add figures in the specs #679 (Remi-Gau)
- [MISC] use RFC 2119 language in legend of the "volume timing" table #678 (Remi-Gau)
- [FIX] Add OPTIONAL acq entity to channels.tsv, events.tsv to match electrophysiological acquisitions #677 (sappelhoff)
- [MISC] Update all links to use HTTPS whenever possible. #676 (gllmflndn)
- [INFRA] Relax line length limit for linting YAML files #673 (effigies)
- [ENH] BEP001 - New entity: flip #672 (agahkarakuzu)
- [ENH] BEP001 - RepetitionTimeExcitation and RepetitionTimePreparation #671 (agahkarakuzu)
- [ENH] Bep 005: Arterial Spin Labeling #669 (sappelhoff)
- [FIX] Added white space after table #660 (robertoostenveld)
- [MISC] add remi as maintainer #657 (Remi-Gau)
- [MISC] update Contributing with info on how to respond to reviews #655 (Remi-Gau)
- [FIX] add paragraph on MEG specific "markers" suffix in MEG spec #653 (sappelhoff)
- [FIX] Rewrite the MRI/fieldmaps subsection for consistency with the rest of specs #651 (oesteban)
- [FIX] Fixing template string on electrodes for eeg and ieeg. #650 (adam2392)
- [ENH] Update genetics-BIDS citation #646 (effigies)
- [SCHEMA] Add derivatives entities to the schema #645 (tsalo)
- [MISC] add brief note that TSV example in the spec may currently use either tab or space characters #643 (yarikoptic)
- [ENH] Add "multipart DWI" acquisitions and refactor DWI specifications #624 (oesteban)
- [SCHEMA] Render schema elements in text #610 (tsalo)
- [ENH] Add part entity for complex-valued data #424 (tsalo)
v1.4.1 (2020-10-13)
- [INFRA] minor robustness enhancements to pdf build shell script #642 (yarikoptic)
- [FIX] consistent CoordinateSystem fields for ephys #641 (sappelhoff)
- [INFRA] set up github action to detect latin phrases #636 (Remi-Gau)
- [ENH] Add a definition for "deprecation" #634 (sappelhoff)
- [MISC] consolidate BIDS citations in introduction #630 (sappelhoff)
- [FIX] URI "definition" and recommendation #629 (Remi-Gau)
- [FIX] change remaining latin expressions (etc and i.e.) #628 (Remi-Gau)
- [FIX] replace "e.g.," by "for example" #626 (Remi-Gau)
- [FIX] arrays of 3D coordinates MUST supply numeric values in x, y, z order #623 (sappelhoff)
- [FIX] Accidentally swapped Neuromag/Elekta/MEGIN cross-talk & fine-calibration filename extensions #621 (hoechenberger)
- [FIX] improve HED documentation #619 (VisLab)
- [INFRA] Move MRI section headings up a level #618 (tsalo)
- [INFRA] SCHEMA: Declare entities by concept names, add entity field for filename components #616 (effigies)
- [FIX] Change wrong text references from *CoordinateSystemUnits to *CoordinateUnits #614 (sappelhoff)
- [ENH] Describe arbitrary units in Common Principles #606 (tsalo)
- [FIX] Clarify data types and requirement levels for all JSON files #605 (sappelhoff)
- [INFRA] downgrade github-changelog-generator to 1.14.3 due to issue with 1.15.2 #600 (sappelhoff)
- [FIX] tighter rules for sharing MEG cross-talk and fine-calibration .fif files #598 (sappelhoff)
- [MISC] Add tsalo as a BIDS maintainer #597 (tsalo)
- [FIX] clarify definition of events in common principles #595 (sappelhoff)
- [INFRA] use --release-branch option in github-changelog-generator #594 (sappelhoff)
- [ENH] Define "modality" and clarify "data type" #592 (effigies)
- [FIX] Adjust index definition to be nonnegative integer #590 (nicholst)
- [MISC] fix links, make json object links consistent, fix pandoc rendering #587 (sappelhoff)
- [FIX] Fix link in Common principles #583 (tsalo)
- [ENH] Specify how to share cross-talk and fine-calibration for Neuromag/Elekta/MEGIN data #581 (sappelhoff)
- [ENH] Specify echo and run indices are nonnegative integers in schema #578 (tsalo)
- [ENH] add optional presentation software name, version, OS, and code to events.json #573 (Remi-Gau)
- [ENH] added PPG as an accepted channel type for EEG, MEG and iEEG #570 (robertoostenveld)
- [INFRA] Move entity definitions to a separate page #568 (tsalo)
- [INFRA] enable pandoc emojis for the pdf build #562 (sappelhoff)
- [INFRA] Auto adjust table fences before PDF conversion #560 (sebastientourbier)
- [ENH] Support run and acq entities in behavior-only data #556 (tsalo)
- [FIX] Clarify requirement levels for TSV metadata fields #555 (sappelhoff)
- [FIX] Reorganize rec, ce entities, _defacemask #550 (emdupre)
- [FIX] Clarify Upper-casing of Channels.tsv Channel Type #548 (adam2392)
- [ENH] Extend date time information to include optional UTC syntax, warn about FIF requirements #546 (sappelhoff)
- [FIX] clarify that \
.json is REQUIRED #542 (sappelhoff) - [FIX] Replace all non-breaking spaces with vanilla spaces #536 (nicholst)
- [FIX] Clarify indices are nonnegative integers. #535 (nicholst)
- [FIX] Clarify use of session entity in filenames #532 (Moo-Marc)
- [ENH] Add the ability of users to specify an explicit HED.xml schema for validation. #527 (VisLab)
- [FIX] clarify that scans.json is allowed and recommended #523 (sappelhoff)
- [INFRA] add copyright holder to license. #521 (sappelhoff)
- [FIX] clarify XXXCoord* in the coordinate systems appendix #520 (sappelhoff)
- [ENH] Update
beh/
specification to contrast with any neural recordings #515 (effigies) - [FIX] restructure and clarify *_physio/*_stim section #513 (sappelhoff)
- [FIX] clarify file formats in EEG, iEEG #511 (sappelhoff)
- [FIX] Add links and release dates to pre GH changelog, fix formatting #509 (sappelhoff)
- [FIX] Clarify that
acq\_time
inscans.json
refers to first data point acquired #506 (tsalo) - [INFRA] make circle artifact link a GH action, point to pdf #505 (sappelhoff)
- [FIX] Typos in DECISION-MAKING file #504 (tsalo)
- [ENH] Add
Commenting on a PR
to CONTRIBUTING.md #490 (franklin-feingold) - [FIX] clarify MEG empty-room recording naming conventions #480 (sappelhoff)
- [INFRA] Convert entity table to yaml #475 (tsalo)
- [FIX] Recommend SI units formatting to adhere to CMIXF-12 #411 (sappelhoff)
v1.4.0 (2020-06-11)
- [FIX] Clarify language on unsetting a key/value pair #495 (nicholst)
- [ENH] optionally allow LICENSE file #483 (sappelhoff)
- [INFRA] linkchecker - ignore github pull and tree URLs #477 (yarikoptic)
- [ENH] Allow fractional seconds in scans file datetimes #470 (tsalo)
- [MISC] Maintainers -
Scope
responsibility #467 (franklin-feingold) - [FIX] Align tables in MRI section #465 (sappelhoff)
- [FIX] Drop
\_part-
reference from example, introduce\_split-
entity #460 (sappelhoff) - [FIX] clarify participants tsv+json with examples and recommendations #459 (sappelhoff)
- [FIX] Remove BESA from list of restricted keywords of EEG coordsystems #457 (sappelhoff)
- [INFRA] add steps for release protocol (PDF upload) #455 (sappelhoff)
- [FIX] Add reference to PDF on front page of specification #452 (nicholst)
- [INFRA] Add conditional for link-checking releases #451 (franklin-feingold)
- [FIX] unordered list formatting in BEP018 #449 (sappelhoff)
- [FIX] fix inconsistencies for task label between sections #446 (Remi-Gau)
- [FIX] update DECISION-MAKING.md document with new governance #441 (sappelhoff)
- [ENH] BEP 003: Common Derivatives #265 (effigies)
- [ENH] Add Glossary of terms/abbreviations used in the specification #152 (yarikoptic)
v1.3.0 (2020-04-14)
- [INFRA] add zenodo badge to README #447 (sappelhoff)
- [MISC] Added contributors from VisLab #444 (VisLab)
- [FIX] Clarify snake_case+CamelCase in TSV+JSON #442 (sappelhoff)
- [FIX] Eliminate web/online-specific language #437 (nicholst)
- [INFRA] ensure build_docs_pdf CircleCI job runs last #436 (sappelhoff)
- [INFRA] Add issue templates for GitHub #434 (sappelhoff)
- [INFRA] Get latest PDF build from CircleCI artifacts #433 (sappelhoff)
- [INFRA] Update release protocol #432 (franklin-feingold)
- [INFRA] add support for building PDF versions of the spec #431 (Arshitha)
- [ENH] Explicitly mention bids-validator and update link #428 (sappelhoff)
- [INFRA] use new bids-maintenance GitHub account to take over automatic work #426 (sappelhoff)
- [FIX] Unify section titles and table-of-contents entries #422 (nicholst)
- [INFRA] add # before heading in CHANGES #419 (sappelhoff)
- [INFRA] fix heading of auto changelog to be a markdown header #417 (sappelhoff)
- [ENH] Add OPTIONAL EthicsApprovals field to dataset description #412 (effigies)
- [ENH] BEP 018 - Genetic Information #395 (effigies)
v1.2.2 (2020-02-12)
- [FIX] improve wording on data dictionaries #410 (sappelhoff)
- [MISC] update contributions by CPernet #409 (CPernet)
- [MISC] Add Sébastien Tourbier to contributors #394 (sebastientourbier)
- [FIX] consistent units description between EEG/MEG/iEEG. Clarify (derived) SI units + prefixes #391 (sappelhoff)
- [MISC] moved list of extension proposals to the main BIDS website #389 (robertoostenveld)
- [FIX] Typos and clarifications #386 (apjanke)
- [INFRA] Add watermark to drafts #383 (effigies)
- [MISC] Teon Brooks retiring moderator duties for BEP021 #381 (teonbrooks)
- [FIX] clarify that string is expected for HowToAcknowledge field in dataset_description.json #380 (sappelhoff)
- [MISC] Typo and style #378 (TheChymera)
- [FIX] divide readme into 3 parts #374 (sappelhoff)
- [FIX] Refer to BIDS consistently, instead of "\
-BIDS" #366 (sappelhoff) - [FIX] Change recommended anonymization date from 1900 to 1925 #363 (alexrockhill)
- [FIX] Minor fixups of inconsistencies while going through a PDF version #362 (yarikoptic)
- [FIX] clarify that filters should be specified as object of objects #348 (sappelhoff)
- [FIX] Clarify channels.tsv is RECOMMENDED consistently across ephys #347 (sappelhoff)
- [FIX] Typo fix (contract -> contrast) in events documentation #346 (snastase)
- [MISC] rm TOC.md - seems no longer pertinent/used #341 (yarikoptic)
- [MISC] Move the PR template to a separate directory and improve contents #338 (jhlegarreta)
- [INFRA] Find npm requirements file in Circle #336 (franklin-feingold)
- [ENH] Clarify phenotypic and assessment data in new section #331 (sappelhoff)
- [MISC] add information about continuous integration checks to PR template #330 (sappelhoff)
- [FIX] Fix
Common principles
Key/value files
section level #328 (jhlegarreta) - [INFRA] Set the maximum heading length lint check to
false
#325 (jhlegarreta) - [FIX] Number explicitly all cases in MRI field map section headers #323 (jhlegarreta)
- [FIX] Add SoftwareFilters to EEG sidecar example #322 (Remi-Gau)
- [MISC] Fixing Travis errors with Remark #320 (franklin-feingold)
- [INFRA] Link to doc builds in CI checks #315 (jasmainak)
- [MISC] Add BEP027 - BIDS Execution to BEP list #314 (effigies)
- [FIX] Add CBV and phase to Entity table #312 (tsalo)
- [FIX] Normalization of template-generated standard spaces #306 (oesteban)
- [ENH] Release protocol notes #304 (franklin-feingold)
- [INFRA] Adding contributor appendix sentence to PR template #299 (franklin-feingold)
- [ENH] Added discontinuous datatype for EEG and iEEG #286 (wouterpotters)
- [FIX] Clarify paragraph about custom data types #264 (effigies)
v1.2.1 (2019-08-14)
- [FIX] repair link in anatomical MRI table #297 (sappelhoff)
- [ENH] Clarify requirements in Release Protocol #294 (franklin-feingold)
- [INFRA] Use linkchecker (from a dedicated docker image) to check all URLs #293 (yarikoptic)
- [ENH] Adding Contributors and updating contributions #284 (franklin-feingold)
- [MISC] update Code of Conduct contact #281 (franklin-feingold)
- [ENH] Update contributing guide and README to make discussion forums easy to find #279 (emdupre)
- [ENH] Starter Kit dropdown menu #278 (franklin-feingold)
- [ENH] BEP Update #277 (franklin-feingold)
- [INFRA] Update pipenv #274 (sappelhoff)
- [INFRA] Transpose the entity table and link to text anchors describing each entity #272 (sappelhoff)
- [ENH] Add Twitter badge to README and link to website to landing page #268 (franklin-feingold)
- [ENH] adding release guidelines #267 (franklin-feingold)
- [FIX] Common principles: Fix filename in inheritance principle #261 (Lestropie)
- [MISC] update modality references #258 (sappelhoff)
- [INFRA] adding logo to RTD #256 (franklin-feingold)
- [INFRA] add footer, replacing mkdocs/material advert with Github link #250 (sappelhoff)
- [MISC] rename logo files, add a README of where they come from, fix favicon #249 (sappelhoff)
- [MISC] updating MEG doc links, manufacturer names, and adding a missing MEG example #248 (sappelhoff)
- [ENH] Add favicon to RTD #246 (franklin-feingold)
- [MISC] Update Authors in BEP025 #241 (josator2)
- [MISC] Document BEPs that are not active anymore, but have not been merged #240 (sappelhoff)
- [FIX] remove ManufacturersAmplifierModelName (again) #236 (robertoostenveld)
- [INFRA] Update release protocol #235 (effigies)
- [INFRA] Enable version panel for quickly finding previous versions #232 (effigies)
- [FIX] Clarify Appendix II: The list of licenses only lists examples #222 (sappelhoff)
- [FIX] Trivial column header fix #220 (nicholst)
- [INFRA] Add clarification on merge methods to DECISION_MAKING #217 (sappelhoff)
- [INFRA] Enable permalink urls to appear at (sub)section headings #214 (yarikoptic)
- [INFRA] bump up mkdocs-materials version #211 (sappelhoff)
- [MISC] Fix github username for @chrisgorgo #204 (chrisgorgo)
- [FIX] clarify example 3 in common principles (inheritance) #202 (sappelhoff)
- [MISC] Expand entity table for MEG/EEG/iEEG specific files #198 (sappelhoff)
- [FIX] make iEEG ToC more consistent with MEG and EEG #191 (robertoostenveld)
- [FIX] Clarify use of acq and task parameters in EEG, MEG, and iEEG #188 (sappelhoff)
- [FIX] clarify use of tools for CTF data renaming #187 (sappelhoff)
- [MISC] Add bep006 and bep010 to completed beps and fix links #186 (sappelhoff)
- [FIX] change file for definition of electrical stimulation labels from _electrodes.json to _events.json #185 (ezemikulan)
- [ENH] relax ieeg channel name requirements of letters and numbers only #182 (sappelhoff)
- [FIX] make MEG section headings and ToC consistent to the EEG and iEEG specs #181 (robertoostenveld)
- [FIX] make section headings and ToC consistent between meg and eeg specs #180 (robertoostenveld)
- [MISC] Spelling fixes #179 (DimitriPapadopoulos)
- [ENH] Alternative directory organization for raw, derived, and source data #178 (chrisgorgo)
- [INFRA] Adding instructions for naming PRs #177 (chrisgorgo)
- [MISC] Introducing Stefan Appelhoff as the first Maintainer #176 (chrisgorgo)
- [FIX] Clarify name of "BrainVision" format #175 (JegouA)
- [FIX] Fixes spelling of continuous #171 (emdupre)
- [FIX] Clarify continuous recording metadata fields #167 (effigies)
- [FIX] changed reference of
dcm2nii
todcm2niix
#166 (DimitriPapadopoulos) - [FIX] Removing a leftover file #162 (chrisgorgo)
- [FIX] Specify marker filenames for KIT data (MEG) #62 (monkeyman192)
- [FIX] Remove father-level for meg filetypes other than BTi/4D data #19 (teonbrooks)
v1.2.0 (2019-03-04)
- [MISC] Adding Dimitri Papadopoulos Orfanos to the list of contributors #157 (DimitriPapadopoulos)
- [FIX] use "specification" not "protocol" to refer to BIDS #156 (yarikoptic)
- [FIX] Fix example misalignment #155 (DimitriPapadopoulos)
- [INFRA] Update Pipfile.lock #144 (franklin-feingold)
- [ENH] clarify decimal sep and numerical notation convention #143 (sappelhoff)
- [ENH] clarify encoding of README, CHANGES, TSV, and JSON files #140 (sappelhoff)
- [MISC] Update site_name and release protocol #137 (franklin-feingold)
- [FIX] Example for IntendedFor was missing session indicator in the filename #129 (yarikoptic)
- [ENH] Add "_phase" suffix to func datatype for functional phase data #128 (tsalo)
- [MISC] Update to Release_Protocol.md #126 (franklin-feingold)
- [MISC] Update tag naming convention #123 (chrisgorgo)
- [ENH] Merge bep006 and bep010 #108 (sappelhoff)
- [MISC] Adding formal decision-making rules #104 (chrisgorgo)
- [FIX] number of small corrections to the specification #98 (robertoostenveld)
v1.1.2 (2019-01-10)
- [ENH] Global fields in data dictionaries #117 (chrisgorgo)
- [MISC] Propose BEP026 MER #116 (greydongilmore)
- [FIX] Remove duplicate entries in MEG table #113 (franklin-feingold)
- [MISC] Propose BEP025 MIDS #110 (josator2)
- [FIX] repair links #106 (sappelhoff)
- [INFRA] Autogenerate CHANGES.md #103 (franklin-feingold)
- [MISC] Added contributor information #100 (jgrethe)
- [ENH] First(?) good practice recommendation. No excessive overrides in Inheritance principle #99 (yarikoptic)
- [MISC] adding extensions page #97 (choldgraf)
- [FIX] fix some urls (as detected to be broken/inconsistent) #95 (yarikoptic)
- [MISC] Change BEP numbers to include MRS #94 (Hboni)
- [FIX] harmonize and thus shorten templates etc #93 (yarikoptic)
- [MISC] put links and some text into README #91 (sappelhoff)
- [FIX] additional table to recap 'volume acquisition timing' #87 (Remi-Gau)
- [FIX] Small typo in "scanning sequence" DICOM Tag #84 (Remi-Gau)
- [ENH] Added CBV contrast #82 (TheChymera)
- [MISC] Add CC-BY 4.0 license #81 (KirstieJane)
- [INFRA] Fix Travis break #80 (franklin-feingold)
- [ENH] allow _dir for other EPI (func, dwi) sequences #78 (yarikoptic)
- [MISC] Added appendix to mkdocs and added some internal links #77 (franklin-feingold)
- [MISC] added JC Houde as contributor. #76 (jchoude)
- [MISC] Updated my contributions #75 (nicholst)
- [FIX] update HED appendix #74 (sappelhoff)
- [FIX] unicode: replace greek mu and omega by micro and ohm signs #73 (sappelhoff)
- [ENH] add
ce-\<label\>
for fmri data #70 (dasturge) - [INFRA] pin pip version #68 (chrisgorgo)
- [MISC] Fix link in index #46 (chrisgorgo)
- [MISC] edit contributing guide #44 (patrick-g-h)
- [INFRA] Mkdocs configuration and RTD setup #42 (choldgraf)
- [MISC] Move definitions, compulsory, and raw/derivatives sections to principles #40 (chrisgorgo)
- [MISC] Remove duplicate section #39 (chrisgorgo)
- [INFRA] mkdocs rendering #36 (chrisgorgo)
- [MISC] Style consistency #35 (chrisgorgo)
- [MISC] Renaming files to conform with style guide #34 (chrisgorgo)
- [INFRA] enable travis cache #32 (chrisgorgo)
- [MISC] corrected link that is shown for CC0 #31 (robertoostenveld)
- [INFRA] added linter integration via travis #30 (chrisgorgo)
- [MISC] Cleanup #29 (chrisgorgo)
- [MISC] split intro, commons, mr, and meg into directory from specification.md #28 (teonbrooks)
- [MISC] Add some bids starter kit contributors #27 (KirstieJane)
- [MISC] Embedded footnotes into text #25 (franklin-feingold)
- [MISC] Making HED Strategy Guide link prettier #24 (fake-filo)
- [MISC] more cleanup #21 (chrisgorgo)
- [MISC] formatted MEG (8.4) #17 (franklin-feingold)
- [MISC] small fixes #16 (chrisgorgo)
- [MISC] Add meg img #14 (sappelhoff)
- [MISC] Cleaning up the specification #13 (chrisgorgo)
- [MISC] Adding code of conduct #6 (chrisgorgo)
- [INFRA] Renaming the main document #1 (chrisgorgo)
1.1.1 (2018-06-06)
- Improved the MEG landmark coordinates description.
- Replaced
ManufacturersCapModelName
inmeg.json
withCapManufacturer
andCapManufacturersModelName
. - Remove
EEGSamplingFrequency
andManufacturersAmplifierModelName
from themeg.json.
- Improved the behavioral data description.
1.1.0 (2018-04-19)
- Added support for MEG data (merged BEP008).
- Added
SequenceName
field. - Added support for describing events with Hierarchical Event Descriptors: 4.3 Task events.
- Added
VolumeTiming
andAcquisitionDuration
fields: 4.1 Task (including resting state) imaging data. - Added
DwellTime
field.
1.0.2 (2017-07-18)
- Added support for high resolution (anatomical) T2star images: 4.1 Anatomy imaging data.
- Added support for multiple defacing masks: 4.1 Anatomy imaging data.
- Added optional key and metadata field for contrast enhanced structural scans: 4.1 Anatomy imaging data.
- Added
DelayTime
field: 4.1 Task (including resting state) imaging data. - Added support for multi echo BOLD data: 4.1 Task (including resting state) imaging data.
1.0.1 (2017-03-13)
- Added
InstitutionName
field: 4.1 Task (including resting state) imaging data. - Added
InstitutionAddress
field: 4.1 Task (including resting state) imaging data. - Added
DeviceSerialNumber
field: 4.1 Task (including resting state) imaging data. - Added
NumberOfVolumesDiscardedByUser
andNumberOfVolumesDiscardedByScanner
field: 4.1 Task (including resting state) imaging data. - Added
TotalReadoutTime to
functional images metadata list: 4.1 Task (including resting state) imaging data.
1.0.1-rc1
- Added T1 Rho maps: 4.1 Anatomy imaging data.
- Added support for phenotypic information split into multiple files: 3.2 Participant key file.
- Added recommendations for multi site datasets.
- Added
SoftwareVersions
. - Added
run-<run_index>
to the phase encoding maps. Improved the description. - Added
InversionTime
metadata key. - Clarification on the source vs raw language.
- Added
trial_type
column to the event files. - Added missing
sub-<participant_label>
in behavioral data filenames. - Added ability to store stimuli files.
- Clarified the language describing allowed subject labels.
- Added quantitative proton density maps.
1.0.0 (2016-06-23)
- Added ability to specify fieldmaps acquired with multiple parameter sets.
- Added ability to have multiple runs of the same fieldmap.
- Added FLASH anatomical images.
1.0.0-rc4
- Replaced links to neurolex with explicit DICOM Tags.
- Added sourcedata.
- Added data dictionaries.
- Be more explicit about contents of JSON files for structural (anatomical) scans.
1.0.0-rc3
- Renamed
PhaseEncodingDirection
values from "x", "y", "z" to "i", "j", "k" to avoid confusion with FSL parameters. - Renamed
SliceEncodingDirection
values from "x", "y", "z" to "i", "j", "k".
1.0.0-rc2
- Removed the requirement that TSV files cannot include more than two consecutive spaces.
- Refactor of the definitions sections (copied from the manuscript).
- Make support for uncompressed
.nii
files more explicit. - Added
BIDSVersion
todataset.json
. - Remove the statement that
SliceEncodingDirection
is necessary for slice time correction. - Change dicom converter recommendation from dcmstack to dcm2nii and dicm2nii following interactions with the community (see https://github.com/moloney/dcmstack/issues/39 and https://github.com/neurolabusc/dcm2niix/issues/4).
- Added section on behavioral experiments with no accompanying MRI acquisition.
- Add
_magnitude.nii[.gz]
image for GE type fieldmaps. - Replaced EchoTimeDifference with EchoTime1 and EchoTime2 (SPM toolbox requires this input).
- Added support for single band reference image for DWI.
- Added DatasetDOI field in the dataset description.
- Added description of more metadata fields relevant to DWI fieldmap correction.
- PhaseEncodingDirection is now expressed in "x", "y" etc. instead of "PA" "RL" for DWI scans (so it's the same as BOLD scans).
- Added
rec-<label>
flag to BOLD files to distinguish between different reconstruction algorithms (analogous to anatomical scans). - Added recommendation to use
_physio
suffix for continuous recordings of motion parameters obtained by the scanner side reconstruction algorithms.
1.0.0-rc1
- Initial release
* This Change Log was automatically generated by github_changelog_generator